Gene Network or Gene Relationship Network – a graph that represents the relations between genes. Each graph node represents one gene (or gene transcript), while each edge represents a relationship between the connected genes. For more details see User Guide chapter: Gene Network Elements. Usually, gene networks are inferred by a statistical application which handles a large amount of micro array data.
CI – Cell Illustrator, the software for simulation of Petri Net models of biological processes and pathways.
Gene Net Mode – a mode of CI, which is dedicated to the handling of gene networks. This mode differs from the normal mode dedicated to the building and simulation of biopathway models. Both modes offer a different user interface.